Cape Town - 2026 ISMRM-ISMRT Annual Meeting and Exhibition
9 May 2026 – 14 May 2026
· Cape Town, South Africa
567-03-014
ISMRM Abstract
MRSeqStudio: A Free and Open-Source Web Application for MR Sequence Design and Simulation as a Service
Primary:
Acquisition & Reconstruction - Open source software, sequences, and reconstruction algorithms
Secondary:
Analysis Methods - Software Tools
567-03-014 · Standardizing MRI Through Data Formats and Phantoms
· Wednesday, 13 May, 1:40 PM–2:35 PM · Digital Posters Row H
Keywords:SimulationsPulse Sequence DesignMotionWeb Service
Accepted
Pablo Villacorta-Aylagas 1, Manuel Rodríguez-Cayetano2,3, Carlos A Castillo-Passi4,5, Pablo Irarrazaval6,7,8,9, Federico Simmross-Wattenberg2,3, Carlos Alberola-López2,3
1Laboratorio de Procesado de Imagen (LPI), Universidad de Valladolid, Valladolid, Spain
2Laboratorio de Procesado de Imagen, UNIVERSIDAD DE VALLADOLID, Valladolid, Spain
3Health Research Institute of Valladolid (IBioVALL), Valladolid, Spain
4Department of Radiology, Stanford University, Stanford, United States of America
5Division of Radiology, Veterans Administration Health Care System, Palo Alto, United States of America
6Universidad Catolica, Chile
7Millennium Institute for Intelligent Healthcare Engineering - iHEALTH, Santiago, Chile
8Institute for Biological and Biomedical Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile
9Department of Electrical Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile
Presenting Author: Pablo Villacorta-Aylagas
Synopsis
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1. Magland JF, Li C, Langham MC, Wehrli FW. Pulse sequence programming in a dynamic visual environment: SequenceTree. Magn. Reson. Med. 2016;75(1):257-265. https://doi.org/10.1002/mrm.25640. [doi]
2. Nielsen JF, Noll DC. TOPPE: A framework for rapid prototyping of MR pulse sequences. Magn. Reson. Med. 2018;79(6):3128-3134. https://doi.org/10.1002/mrm.26990. [doi]
3. Treceño-Fernández D, Calabia-Del-Campo J, Bote-Lorenzo M.L, Gómez-Sánchez E, Luis-García R, Alberola-López C. A Web-Based Educational Magnetic Resonance Simulator: Design, Implementation and Testing. Journal of Medical Systems. 2019;44(1):1-11. https://doi.org/10.1007/s10916-019-1470-7. [doi]
5. Konstandin S, Günther, M, Hoinkiss DC. gammaSTAR: A framework for the development of dynamic, real-time capable MR sequences. Magn. Reson. Med. 2025;94(4):1485-1499. https://doi.org/10.1002/mrm.30573. [doi]
6. Cencini M, Wang K, Huang S, Schulte RF, Sprenger T, Noll DC, Tosetti M, Nielsen JF. Pulserver: an open-source Pulseq-based client-server framework for vendor agnostic, interactive MR sequence design. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition, Honolulu, Hawaii, USA (2025). Abstract #1275. https://archive.ismrm.org/2025/1275_4GECnHR7z.
7. Artiges A, Saimbhi AS, Castillo-Passi C, Lattanzi R, Block KT. mtrk – A flexible environment for developing open-source MRI pulse sequences. Magn. Reson. Med. 2025; (Early view). https://doi.org/10.1002/mrm.70067. [doi]
9. Liu F, Velikina J, Block W, Kijowski R, Samsonov A. Fast realistic MRI Simulations based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016;36(2):527-537. https://doi.org/10.1109/TMI.2016.2620961. [doi]
10. Weine J, McGrath C, Dirix P, Buoso S, Kozerke S. CMRsim – A python package for cardiovascular MR simulations incorporating complex motion and flow. Magn. Reson. Med. 2024;91(6):2621-2637. https://doi.org/10.1002/mrm.30010. [doi]
11. Castillo-Passi C, Coronado R, Varela-Mattatall G, Alberola-López C, Botnar R, Irarrazaval P. KomaMRI.jl: An open-source framework for general MRI simulations with GPU acceleration. Magn. Reson. Med. 2023;90(1):329-342. https://doi.org/10.1002/mrm.29635. [doi]
12. Layton KJ, Kroboth S, Jia F, et al. Pulseq: A rapid and hardware-independent pulse sequence prototyping framework. Magn. Reson. Med. 2017;77(4):1544-1552. https://doi.org/10.1002/mrm.26235. [doi]
13. Ravi KS, Geethanaath S, Vaughan-Jr JT. PyPulseq: A Python Package for MRI Pulse Sequence Design. Journal of Open Source Software. 2019;4(42):1725. https://doi.org/10.21105/joss.01725. [doi]
14. Montin E, Carluccio G, Collins CM, Lattanzi R. CAMRIE – Cloud-Accessible MRI Emulator. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition, Virtual Conference (2020). Abstract #1037. https://archive.ismrm.org/2020/1037.
15. Montin E, Serrallés JEC, Giannakopoulos I, Artiges A, Castillo-Passi C, Lattanzi R. A Modular End-to-End Open-Source Software Pipeline to Simulate the Entire MRI Experiment. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition, Honolulu, Hawaii, USA (2025). Abstract #0943. https://archive.ismrm.org/2025/0943.
16. Villacorta-Aylagas P, Castillo-Passi C, Menchón-Lara RM, Irarrázaval P, Sierra-Pallares J, Alberola-López C. A KomaMRI Phantom Extension for Integrated Dynamic Imaging. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition, Singapore (2024). Abstract #4686. https://archive.ismrm.org/2024/4686.
17. Villacorta-Aylagas P, Castillo-Passi C, Kierulf R, Menchón-Lara RM, Rodríguez-Galván JR, Sierra-Pallares J, Irarrázaval P, Alberola-López C. Versatile and Highly Efficient MRI Simulation of Arbitrary Motion in KomaMRI. Magn. Reson. Med. 2025; (Early view). https://doi.org/10.1002/mrm.70145. [doi]